by DrChika

Microorganisms are studied for diverse reasons. These microscopic forms of life play tremendous significant roles in the natural environment. They are ubiquitously found in all environments including aquatic, terrestrial and arboreal habitats as well as in hot springs and icebergs where life rarely exists.

Microorganisms harbour many beneficial qualities, and these features of theirs have been exploited by man since time immemorial and even till date to improve the quality of life and in the production of diverse products that are of medical, industrial, pharmaceutical and economic importance amongst other advantages. However, some microorganisms are not beneficial to man, plants and animals because they cause infections and diseases in them.

A handful of microorganisms including bacteria, fungi, viruses and protozoa are pathogenic microorganisms because they cause disease in man and other animals. Some of the benefits of microorganisms to man and his environments, aside their deleterious and harmful activities are as follows: 

  • Biodegradation: Biodegradation is the breaking down of substances such as organic matters including biological and environmental wastes through the activities of microorganisms. It is synonymous to bioremediation – which is the biotechnologically-driven method of cleaning-up pollutants in the environment (e.g. oil spillage) using certain group of microorganisms.

Bioremediation is the technique of cleaning up environmental pollutants based on the capacities of microorganisms to degrade and store chemical compounds. Virtually all naturally-occurring organic compounds can be degraded or broken down by some microorganisms including Pseudomonas and Bacillus species. Chemicals found in gasoline and oil spills are eaten up by microbes, and as such these organisms are employed in cleaning up the environment whenever they are contaminated by such pollutants. Pseudomonas is an example of microorganism that has been exploited for this particular purpose.

When microorganisms feed on or digest these pollutants, water, carbon dioxide and other harmless and environmentally friendly products are produced. Both biodegradation and bioremediation are safe because they make use of natural processes (i.e. the metabolic and degradative potentials of microorganisms) to clean up a polluted environment. In most developed countries, microorganisms have been exploited in waste management including landfills, sewage degradation and composting activities.

  • Food spoilage: Due to their ubiquity, microorganisms cause food spoilage in foods and grains or other unprocessed food including those stored in the refrigerator or supermarket. Cooked food and already processed food are not left out as they can also be attacked by microbes particularly fungi.

Food contamination by microorganisms (especially bacteria and fungi) has been a source of infections in humans such as food poisoning especially after the consumption of food contaminated by microbes. Microorganisms thrive in food because most foodstuffs especially the processed ones contain some of the nutritional requirements that encourage the growth of microbes.   

  • Production of foods: Though they may cause food spoilage and disease, microorganisms has been exploited in the production of a handful of beverages, fermented and non-fermented food products for both man and animals. Food products manufactured through the metabolic activities of microorganisms include yoghurt, beer, cheese, bread, wine, vinegar, and probiotics amongst others.

Probiotics are microbial culture preparations which help to promote good health in humans by inhibiting pathogens and promoting good health in the recipient host particularly in the gastrointestinal tract (GIT).

  • Recycling of nutrients in the ecosystem: Nutrients including oxygen, carbon, nitrogen, sulphur and phosphorus to mention but a few are generally recycled in nature through the activities of some group of microorganisms. These elements/nutrients exist in complex molecular forms that cannot be utilized by living organisms, and thus must be broken down into simpler forms that can be shared and used by these organisms including humans.

This is only made possible through the metabolic activities that occur in microorganisms which make them able to recycle some of these very important elements in nature. Both fungi and bacteria play critical roles in the recycling of nutrients in the ecosystem, and these groups of microorganisms are very important in agriculture because of their degradative and recycling activities.

  • Digestion of nutrients in man and animals: Microorganisms play significant role in the breaking down of food molecules in the body of both man and animals. For example in ruminant animals (i.e. animals with four chambered stomach such as cow), microorganisms in the rumen of these animals helps to breakdown food nutrients. They are also sources of carbon, vitamins and other proteinous substances.

Bacteria found in the rumen of animals also help to breakdown cellulose (an indigestible form of carbohydrate found mainly in plants) by producing enzymes that carries out this important activity. 

  • Promotion of health and nutrition: Bifidobacterium and Lactobacillus are two important bacteria that exist in the gastrointestinal tract (GIT) of humans where they are widely believed to synthesize vitamins and other important nutrients which helps to boost the health of man. These microorganisms in addition to many others also help to protect the body against infections by preventing the multiplication of pathogenic microorganisms in the gut or GIT.

In the female vagina for example, Lactobacillus acidophilus is a bacterium that colonizes the vaginal wall and it helps to prevent the invasion of pathogens by creating a low pH which makes that particular environment (i.e. the vagina) hostile to bacterial pathogens.     

  • Biomedical research applications: Saccharomyces cerevisiae (a fungus) and Escherichia coli (a bacterium) are two of the most exploited and widely studied forms of microorganisms whose metabolic activities have been exploited and harnessed by man to manufacture a variety of useful products as well as unravel some of the mysteries surrounding some infectious diseases in man.

Information’s from these microbes are used as models for studying other cellular forms of lives including physiologic and biological information’s that pertains to both prokaryotic and eukaryotic cells. 

  • Production of biofuels: Microorganisms (yeast and bacteria inclusive) are currently exploited in the fermentation processes or industries to convert carbohydrates such as cassava to produce biofuels (e.g. ethanol) which is used for various industrial and domestic purposes.

In some developed economies, biofuels are currently used to fuel cars; and it is believed that in the nearest future, biofuels may replace premium motor spirit (PMS) otherwise known as “car fuel” since biofuels are cleaner forms of energy than PMS.

  • Medical purposes: In medicine, microorganisms have played significant roles in the alleviation of man’s plights in the face of infectious diseases. Most significant was the discovery of penicillin (the first antibiotic), a by-product of Penicillium notatum (a fungus). Penicillin was serendipitously discovered by Alexander Fleming, a famous microbiologists in 1928; and this antimicrobial agent is an antibiotic used till date mainly for the treatment of bacterial related infections.

A handful of antibiotics used today in clinical medicine were initially sourced from microbial cells (bacterial and fungal cells in particular), though some are synthetically produced today. Microorganisms including Bacillus, Streptomyces, and Penicillium to mention but a few synthesize antimicrobial agents which are basically substances produced by microbes, and which inhibit or kill other microorganisms.

Despite the growing level of resistance, microorganisms have continued to be a source of antibiotics used for the treatment of infectious diseases in both veterinary and human medicine. Microorganisms (particularly viruses and bacteria) are also a source of vaccines which are used in humans and animals as a preventive measure against infectious diseases.

  • Biotechnology: Microorganisms have been genetically exploited in recent times through biotechnology to produce useful substances including insulin, vaccines, hormones, antibodies, food for both humans and animals; fertilizers, improved seedlings and insecticides for agricultural practices and even diagnostic tools for clinical and laboratory diagnosis of diseases.

Biotechnology is simply defined as the application of biology in the industry i.e. the production of valuable substances using microorganisms through technology. This very important field that incorporates recombinant DNA technology and genetic engineering has been applied in agriculture, pharmaceutical processes, medicine, and even in food industries to develop improved products and services beneficial to mankind. In biotechnology, microorganisms are genetically manipulated and engineered to produce a desired product in large quantity.        


Atlas R.M (2010). Handbook of Microbiological Media. Fourth edition. American Society of Microbiology Press, USA.

Balows A, Hausler W, Herrmann K.L, Isenberg H.D and Shadomy H.J (1991). Manual of clinical microbiology. 5th ed. American Society of Microbiology Press, USA.

Beers M.H., Porter R.S., Jones T.V., Kaplan J.L and Berkwits M (2006). The Merck Manual of Diagnosis and Therapy. Eighteenth edition. Merck & Co., Inc, USA.

Black, J.G. (2008). Microbiology:  Principles and Explorations (7th ed.). Hoboken, NJ: J. Wiley & Sons.

Brooks G.F., Butel J.S and Morse S.A (2004). Medical Microbiology, 23rd edition. McGraw Hill Publishers. USA. Pp. 248-260.

Dictionary of Microbiology and Molecular Biology, 3rd Edition. Paul Singleton and Diana Sainsbury. 2006, John Wiley & Sons Ltd. Canada.

Dubey, R. C. and Maheshwari, D. K. (2004). Practical Microbiology. S.Chand and Company  LTD, New Delhi, India.

Garcia L.S (2010). Clinical Microbiology Procedures Handbook. Third edition. American Society of Microbiology Press, USA.

Garcia L.S (2014). Clinical Laboratory Management. First edition. American Society of Microbiology Press, USA.

Madigan M.T., Martinko J.M., Dunlap P.V and Clark D.P (2009). Brock Biology of Microorganisms, 12th edition. Pearson Benjamin Cummings Inc, USA.

Mahon C. R, Lehman D.C and Manuselis G (2011). Textbook of Diagnostic Microbiology. Fourth edition. Saunders Publishers, USA.

Prescott L.M., Harley J.P and Klein D.A (2005). Microbiology. 6th ed. McGraw Hill Publishers, USA. Pp. 296-299.

Ryan K, Ray C.G, Ahmed N, Drew W.L and Plorde J (2010). Sherris Medical Microbiology. Fifth edition. McGraw-Hill Publishers, USA.

Ryan K, Ray C.G, Ahmed N, Drew W.L and Plorde J (2010). Sherris Medical Microbiology. Fifth edition. McGraw-Hill Publishers, USA.

Singleton P and Sainsbury D (1995). Dictionary of microbiology and molecular biology, 3rd ed. New York: John Wiley and Sons.

Talaro, Kathleen P (2005). Foundations in Microbiology. 5th edition. McGraw-Hill Companies Inc., New York, USA.

Salyers A.A and Whitt D.D (2001). Microbiology: diversity, disease, and the environment. Fitzgerald Science Press Inc. Maryland, USA.

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